Chip Technology by Sridhar Hannenhalli, Earl Hubbell, Robert Lipshutz, Pavel A.

By Sridhar Hannenhalli, Earl Hubbell, Robert Lipshutz, Pavel A. Pevzner (auth.), Dr. Jörg Hoheisel, A. Brazma, K. Büssow, C. R. Cantor, F. C. Christians, G. Chui, R. Diaz, R. Drmanac, S. Drmanac, H. Eickhoff, K. Fellenberg, S. Hannenhalli, J. Hoheisel, A. Ho

DNA-chip research has come a ways because the first convention in Moscow in 1991. these days, DNA-microarrays appear to be a typical commodity in organic sciences. The complexity hidden in the back of the plain ease of such reports, even though, is highlighted through the truth that it took approximately ten years ahead of the method rather trigger. additionally, on nearer scrutiny, one realises that a few difficulties nonetheless stay. however, microarrays produce information on a scale past mind's eye many years in the past. The authors of the ebook took half in bringing this approximately. they're famous specialists within the box, many - like Edwin Southern, Hans Lehrach, Radoje Drmanac, Pavel Pevzner and Charles Cantor - were actively pursuing array expertise for greater than a decade. They reveal the continual improvement in either expertise and alertness components and elucidate on severe issues that have to be thought of while acting microarray analyses.

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Chip Technology

DNA-chip research has come a ways because the first convention in Moscow in 1991. these days, DNA-microarrays appear to be a standard commodity in organic sciences. The complexity hidden at the back of the plain ease of such stories, notwithstanding, is highlighted by way of the truth that it took approximately ten years prior to the method rather trigger.

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H. C. Christians and multiple-wafer lots can be processed together in a procedure that takes less than 24 h to complete. Multiple lots are processed simultaneously on independent production synthesizers operating continuously. After a final chemical deprotection, finished wafers are diced into individual arrays, which are finally mounted in injection-molded plastic cartridges for single-use application (see Fig. 1). 2 Photolithography The photolithographic process provides a very efficient route to high-density arrays by allowing parallel synthesis of large sets of probe sequences.

Solid Supports for Making Arrays . . . . . . . Masks for Making Arrays: Materials and Machining . . Making Scanning Arrays on an ABI DNA/RNA Synthesiser Deprotection of Arrays . . . . . . . . . . Hybridisation of a Labeled Target to Scanning Arrays . Reading a Scanning Array Image . . . . . . . 2 High-Throughput Screening of Antisense Reagents . . . . 53 The Study of Nucleic Acid Folding and Heteroduplex Formation . 54 . . . . . . . . 47 .

A complete set, or any subset, of probe sequences of length “n” requires 4¥n synthetic steps, at most. Masks can be designed to make arrays of oligonucleotide probe sequences for a variety of applications. Most arrays are comprised of custom-designed sets of probes 20–25 bases in length, and optimized masking strategies allow such arrays to be completed in as few as 3 n steps. The spatial resolution of the photolithographic process determines the maximum achievable density of the array and therefore the amount of sequence information that can be encoded on a chip of a given physical dimension.

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